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#ifndef PCL_HARRIS_KEYPOINT_6D_IMPL_H_
#define PCL_HARRIS_KEYPOINT_6D_IMPL_H_
#include <Eigen/Eigenvalues> // for SelfAdjointEigenSolver
#include <pcl/keypoints/harris_6d.h>
#include <pcl/common/io.h>
#include <pcl/features/normal_3d.h>
//#include <pcl/features/fast_intensity_gradient.h>
#include <pcl/features/intensity_gradient.h>
#include <pcl/features/integral_image_normal.h>
template <typename PointInT, typename PointOutT, typename NormalT> void
pcl::HarrisKeypoint6D<PointInT, PointOutT, NormalT>::setThreshold (float threshold)
{
threshold_= threshold;
}
template <typename PointInT, typename PointOutT, typename NormalT> void
pcl::HarrisKeypoint6D<PointInT, PointOutT, NormalT>::setRadius (float radius)
{
search_radius_ = radius;
}
template <typename PointInT, typename PointOutT, typename NormalT> void
pcl::HarrisKeypoint6D<PointInT, PointOutT, NormalT>::setRefine (bool do_refine)
{
refine_ = do_refine;
}
template <typename PointInT, typename PointOutT, typename NormalT> void
pcl::HarrisKeypoint6D<PointInT, PointOutT, NormalT>::setNonMaxSupression (bool nonmax)
{
nonmax_ = nonmax;
}
//////////////////////////////////////////////////////////////////////////////////////////////////////////////////
template <typename PointInT, typename PointOutT, typename NormalT> void
pcl::HarrisKeypoint6D<PointInT, PointOutT, NormalT>::calculateCombinedCovar (const pcl::Indices& neighbors, float* coefficients) const
{
memset (coefficients, 0, sizeof (float) * 21);
unsigned count = 0;
for (const auto &neighbor : neighbors)
{
if (std::isfinite ((*normals_)[neighbor].normal_x) && std::isfinite ((*intensity_gradients_)[neighbor].gradient [0]))
{
coefficients[ 0] += (*normals_)[neighbor].normal_x * (*normals_)[neighbor].normal_x;
coefficients[ 1] += (*normals_)[neighbor].normal_x * (*normals_)[neighbor].normal_y;
coefficients[ 2] += (*normals_)[neighbor].normal_x * (*normals_)[neighbor].normal_z;
coefficients[ 3] += (*normals_)[neighbor].normal_x * (*intensity_gradients_)[neighbor].gradient [0];
coefficients[ 4] += (*normals_)[neighbor].normal_x * (*intensity_gradients_)[neighbor].gradient [1];
coefficients[ 5] += (*normals_)[neighbor].normal_x * (*intensity_gradients_)[neighbor].gradient [2];
coefficients[ 6] += (*normals_)[neighbor].normal_y * (*normals_)[neighbor].normal_y;
coefficients[ 7] += (*normals_)[neighbor].normal_y * (*normals_)[neighbor].normal_z;
coefficients[ 8] += (*normals_)[neighbor].normal_y * (*intensity_gradients_)[neighbor].gradient [0];
coefficients[ 9] += (*normals_)[neighbor].normal_y * (*intensity_gradients_)[neighbor].gradient [1];
coefficients[10] += (*normals_)[neighbor].normal_y * (*intensity_gradients_)[neighbor].gradient [2];
coefficients[11] += (*normals_)[neighbor].normal_z * (*normals_)[neighbor].normal_z;
coefficients[12] += (*normals_)[neighbor].normal_z * (*intensity_gradients_)[neighbor].gradient [0];
coefficients[13] += (*normals_)[neighbor].normal_z * (*intensity_gradients_)[neighbor].gradient [1];
coefficients[14] += (*normals_)[neighbor].normal_z * (*intensity_gradients_)[neighbor].gradient [2];
coefficients[15] += (*intensity_gradients_)[neighbor].gradient [0] * (*intensity_gradients_)[neighbor].gradient [0];
coefficients[16] += (*intensity_gradients_)[neighbor].gradient [0] * (*intensity_gradients_)[neighbor].gradient [1];
coefficients[17] += (*intensity_gradients_)[neighbor].gradient [0] * (*intensity_gradients_)[neighbor].gradient [2];
coefficients[18] += (*intensity_gradients_)[neighbor].gradient [1] * (*intensity_gradients_)[neighbor].gradient [1];
coefficients[19] += (*intensity_gradients_)[neighbor].gradient [1] * (*intensity_gradients_)[neighbor].gradient [2];
coefficients[20] += (*intensity_gradients_)[neighbor].gradient [2] * (*intensity_gradients_)[neighbor].gradient [2];
++count;
}
}
if (count > 0)
{
float norm = 1.0 / float (count);
coefficients[ 0] *= norm;
coefficients[ 1] *= norm;
coefficients[ 2] *= norm;
coefficients[ 3] *= norm;
coefficients[ 4] *= norm;
coefficients[ 5] *= norm;
coefficients[ 6] *= norm;
coefficients[ 7] *= norm;
coefficients[ 8] *= norm;
coefficients[ 9] *= norm;
coefficients[10] *= norm;
coefficients[11] *= norm;
coefficients[12] *= norm;
coefficients[13] *= norm;
coefficients[14] *= norm;
coefficients[15] *= norm;
coefficients[16] *= norm;
coefficients[17] *= norm;
coefficients[18] *= norm;
coefficients[19] *= norm;
coefficients[20] *= norm;
}
}
//////////////////////////////////////////////////////////////////////////////////////////////////////////////////
template <typename PointInT, typename PointOutT, typename NormalT> void
pcl::HarrisKeypoint6D<PointInT, PointOutT, NormalT>::detectKeypoints (PointCloudOut &output)
{
if (normals_->empty ())
{
normals_->reserve (surface_->size ());
if (!surface_->isOrganized ())
{
pcl::NormalEstimation<PointInT, NormalT> normal_estimation;
normal_estimation.setInputCloud (surface_);
normal_estimation.setRadiusSearch (search_radius_);
normal_estimation.compute (*normals_);
}
else
{
IntegralImageNormalEstimation<PointInT, NormalT> normal_estimation;
normal_estimation.setNormalEstimationMethod (pcl::IntegralImageNormalEstimation<PointInT, NormalT>::SIMPLE_3D_GRADIENT);
normal_estimation.setInputCloud (surface_);
normal_estimation.setNormalSmoothingSize (5.0);
normal_estimation.compute (*normals_);
}
}
pcl::PointCloud<pcl::PointXYZI>::Ptr cloud (new pcl::PointCloud<pcl::PointXYZI>);
cloud->resize (surface_->size ());
#pragma omp parallel for \
default(none) \
num_threads(threads_)
for (unsigned idx = 0; idx < surface_->size (); ++idx)
{
cloud->points [idx].x = surface_->points [idx].x;
cloud->points [idx].y = surface_->points [idx].y;
cloud->points [idx].z = surface_->points [idx].z;
//grayscale = 0.2989 * R + 0.5870 * G + 0.1140 * B
cloud->points [idx].intensity = 0.00390625 * (0.114 * float(surface_->points [idx].b) + 0.5870 * float(surface_->points [idx].g) + 0.2989 * float(surface_->points [idx].r));
}
pcl::copyPointCloud (*surface_, *cloud);
IntensityGradientEstimation<PointXYZI, NormalT, IntensityGradient> grad_est;
grad_est.setInputCloud (cloud);
grad_est.setInputNormals (normals_);
grad_est.setRadiusSearch (search_radius_);
grad_est.compute (*intensity_gradients_);
#pragma omp parallel for \
default(none) \
num_threads(threads_)
for (std::size_t idx = 0; idx < intensity_gradients_->size (); ++idx)
{
float len = intensity_gradients_->points [idx].gradient_x * intensity_gradients_->points [idx].gradient_x +
intensity_gradients_->points [idx].gradient_y * intensity_gradients_->points [idx].gradient_y +
intensity_gradients_->points [idx].gradient_z * intensity_gradients_->points [idx].gradient_z ;
// Suat: ToDo: remove this magic number or expose using set/get
if (len > 200.0)
{
len = 1.0 / sqrt (len);
intensity_gradients_->points [idx].gradient_x *= len;
intensity_gradients_->points [idx].gradient_y *= len;
intensity_gradients_->points [idx].gradient_z *= len;
}
else
{
intensity_gradients_->points [idx].gradient_x = 0;
intensity_gradients_->points [idx].gradient_y = 0;
intensity_gradients_->points [idx].gradient_z = 0;
}
}
typename pcl::PointCloud<PointOutT>::Ptr response (new pcl::PointCloud<PointOutT>);
response->points.reserve (input_->size());
responseTomasi(*response);
// just return the response
if (!nonmax_)
{
output = *response;
// we do not change the denseness in this case
output.is_dense = input_->is_dense;
for (std::size_t i = 0; i < response->size (); ++i)
keypoints_indices_->indices.push_back (i);
}
else
{
output.clear ();
output.reserve (response->size());
#pragma omp parallel for \
default(none) \
num_threads(threads_)
for (std::size_t idx = 0; idx < response->size (); ++idx)
{
if (!isFinite ((*response)[idx]) || (*response)[idx].intensity < threshold_)
continue;
pcl::Indices nn_indices;
std::vector<float> nn_dists;
tree_->radiusSearch (idx, search_radius_, nn_indices, nn_dists);
bool is_maxima = true;
for (const auto& index : nn_indices)
{
if ((*response)[idx].intensity < (*response)[index].intensity)
{
is_maxima = false;
break;
}
}
if (is_maxima)
#pragma omp critical
{
output.push_back ((*response)[idx]);
keypoints_indices_->indices.push_back (idx);
}
}
if (refine_)
refineCorners (output);
output.height = 1;
output.width = output.size();
output.is_dense = true;
}
}
template <typename PointInT, typename PointOutT, typename NormalT> void
pcl::HarrisKeypoint6D<PointInT, PointOutT, NormalT>::responseTomasi (PointCloudOut &output) const
{
// get the 6x6 covar-mat
PointOutT pointOut;
PCL_ALIGN (16) float covar [21];
Eigen::SelfAdjointEigenSolver <Eigen::Matrix<float, 6, 6> > solver;
Eigen::Matrix<float, 6, 6> covariance;
#pragma omp parallel for \
default(none) \
firstprivate(pointOut, covar, covariance, solver) \
num_threads(threads_)
for (unsigned pIdx = 0; pIdx < input_->size (); ++pIdx)
{
const PointInT& pointIn = input_->points [pIdx];
pointOut.intensity = 0.0; //std::numeric_limits<float>::quiet_NaN ();
if (isFinite (pointIn))
{
pcl::Indices nn_indices;
std::vector<float> nn_dists;
tree_->radiusSearch (pointIn, search_radius_, nn_indices, nn_dists);
calculateCombinedCovar (nn_indices, covar);
float trace = covar [0] + covar [6] + covar [11] + covar [15] + covar [18] + covar [20];
if (trace != 0)
{
covariance.coeffRef ( 0) = covar [ 0];
covariance.coeffRef ( 1) = covar [ 1];
covariance.coeffRef ( 2) = covar [ 2];
covariance.coeffRef ( 3) = covar [ 3];
covariance.coeffRef ( 4) = covar [ 4];
covariance.coeffRef ( 5) = covar [ 5];
covariance.coeffRef ( 7) = covar [ 6];
covariance.coeffRef ( 8) = covar [ 7];
covariance.coeffRef ( 9) = covar [ 8];
covariance.coeffRef (10) = covar [ 9];
covariance.coeffRef (11) = covar [10];
covariance.coeffRef (14) = covar [11];
covariance.coeffRef (15) = covar [12];
covariance.coeffRef (16) = covar [13];
covariance.coeffRef (17) = covar [14];
covariance.coeffRef (21) = covar [15];
covariance.coeffRef (22) = covar [16];
covariance.coeffRef (23) = covar [17];
covariance.coeffRef (28) = covar [18];
covariance.coeffRef (29) = covar [19];
covariance.coeffRef (35) = covar [20];
covariance.coeffRef ( 6) = covar [ 1];
covariance.coeffRef (12) = covar [ 2];
covariance.coeffRef (13) = covar [ 7];
covariance.coeffRef (18) = covar [ 3];
covariance.coeffRef (19) = covar [ 8];
covariance.coeffRef (20) = covar [12];
covariance.coeffRef (24) = covar [ 4];
covariance.coeffRef (25) = covar [ 9];
covariance.coeffRef (26) = covar [13];
covariance.coeffRef (27) = covar [16];
covariance.coeffRef (30) = covar [ 5];
covariance.coeffRef (31) = covar [10];
covariance.coeffRef (32) = covar [14];
covariance.coeffRef (33) = covar [17];
covariance.coeffRef (34) = covar [19];
solver.compute (covariance);
pointOut.intensity = solver.eigenvalues () [3];
}
}
pointOut.x = pointIn.x;
pointOut.y = pointIn.y;
pointOut.z = pointIn.z;
#pragma omp critical
output.push_back(pointOut);
}
output.height = input_->height;
output.width = input_->width;
}
template <typename PointInT, typename PointOutT, typename NormalT> void
pcl::HarrisKeypoint6D<PointInT, PointOutT, NormalT>::refineCorners (PointCloudOut &corners) const
{
pcl::search::KdTree<PointInT> search;
search.setInputCloud(surface_);
Eigen::Matrix3f nnT;
Eigen::Matrix3f NNT;
Eigen::Vector3f NNTp;
const Eigen::Vector3f* normal;
const Eigen::Vector3f* point;
float diff;
const unsigned max_iterations = 10;
for (typename PointCloudOut::iterator cornerIt = corners.begin(); cornerIt != corners.end(); ++cornerIt)
{
unsigned iterations = 0;
do {
NNT.setZero();
NNTp.setZero();
PointInT corner;
corner.x = cornerIt->x;
corner.y = cornerIt->y;
corner.z = cornerIt->z;
pcl::Indices nn_indices;
std::vector<float> nn_dists;
search.radiusSearch (corner, search_radius_, nn_indices, nn_dists);
for (const auto& index : nn_indices)
{
normal = reinterpret_cast<const Eigen::Vector3f*> (&((*normals_)[index].normal_x));
point = reinterpret_cast<const Eigen::Vector3f*> (&((*surface_)[index].x));
nnT = (*normal) * (normal->transpose());
NNT += nnT;
NNTp += nnT * (*point);
}
if (NNT.determinant() != 0)
*(reinterpret_cast<Eigen::Vector3f*>(&(cornerIt->x))) = NNT.inverse () * NNTp;
diff = (cornerIt->x - corner.x) * (cornerIt->x - corner.x) +
(cornerIt->y - corner.y) * (cornerIt->y - corner.y) +
(cornerIt->z - corner.z) * (cornerIt->z - corner.z);
} while (diff > 1e-6 && ++iterations < max_iterations);
}
}
#define PCL_INSTANTIATE_HarrisKeypoint6D(T,U,N) template class PCL_EXPORTS pcl::HarrisKeypoint6D<T,U,N>;
#endif // #ifndef PCL_HARRIS_KEYPOINT_6D_IMPL_H_